Single-cell data analysis
After preparing and sequencing your samples, the obtained data will undergo standard processing. The following set of files will be sent to you:
- FASTQ (the raw reads from the Illumina sequencing platform)
- SAM (the aligned reads)
- BAM (a binary version of the SAM file)
- Count table (for further analysis in R)
As the interpretation of single-cell DNA data is complicated and there are few well-established analysis tools/packages available, we would like to offer the necessary tools to analyze your samples.
This custom analysis will be performed by a bioinformatician with at least a PhD level of experience, at an hourly rate. As these bioinformaticians are self-employed (zzp), Single-Cell Core merely provides the initial connection with the supportive bioinformatician.